BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002F01LP1|AL424988
(783 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1469 1493 0.0
>3x_Contig1469
Length = 9240
Score = 1493 bits (745), Expect = 0.0
Identities = 767/783 (97%)
Strand = Plus / Minus
Query: 1 gcctcgctcgggatgttagatgtrgtagtagttgttctttgaatgggactatttgcctta 60
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1452 gcctcgctcggaatgttagatgtagtagtagttgttctttgaatgggactatttgcctta 1393
Query: 61 gagattcgggatttattagarttttgtatctcattggctatcttacttacttgagagtcc 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 gagattcgggatttattagaattttgtatctcattggctatcttacttacttgagagtcc 1333
Query: 121 gtcttatttttdgttttcggrgcggcaggraccgctgctgaccccttcgatgtgggagtr 180
||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 1332 gtcttatttttagttttcggagcggcaggaaccgctgctgaccccttcgatgtgggagta 1273
Query: 181 ccaccagacgatgctcttgcgcgtgtcaataggttcaggtctatrtcgttcaaactagtt 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1272 ccaccagacgatgctcttgcgcgtgtcaataggttcaggtctatatcgttcaaactagtt 1213
Query: 241 tcaratgcraaattgactttgttcggtgccttaacaatgctcttgctaaccggtttggga 300
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1212 tcaaatgcaaaattgactttgttcggtgccttaacaatgctcttgctaaccggtttggaa 1153
Query: 301 tttctctgagatggrgactctatgtgcttgtgtatacgtcccgatgaagacaaactggrc 360
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1152 tttctctgaaatggagactctatgtgcttgtgtatacgtcccgatgaagacaaactggac 1093
Query: 361 tgttgtcttctcagcacttcatcttcgacaacacgcttcgataaccctgttctttccaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 tgttgtcttctcagcacttcatcttcgacaacacgcttcgataaccctgttctttccaag 1033
Query: 421 ggtttcctctgaggagctttatcgatattcgattgtggcggtgatgaaaccttgctatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 ggtttcctctgaggagctttatcgatattcgattgtggcggtgatgaaaccttgctatca 973
Query: 481 ccaacgtatagagatttcracatctcagtatgcgaagtactacttttccggttagtgtag 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 ccaacgtatagagatttcaacatctcagtatgcgaagtactacttttccggttagtgtag 913
Query: 541 cttttctgcttttgatattgcgatccagaagcggcaggtgaaggtgaaggtgatggctgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 cttttctgcttttgatattgcgatccagaagcggcaggtgaaggtgaaggtgatggctgt 853
Query: 601 cgcgacgaaaaaggacggtcccaaccggatcgtacctgtgaagtccgcaccttggagttt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 cgcgacgaaaaaggacggtcccaaccggatcgtacctgtgaagtccgcaccttggagttt 793
Query: 661 tcctcagagcgactagttttggaattgacagtcttggaacgtctatacacctgaggagtg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 tcctcagagcgactagttttggaattgacagtcttggaacgtctatacacctgaggagtg 733
Query: 721 gtcggagtcgaacttgaacccggtcttgacgtcaaattttgcttkgtatccatattttgt 780
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 732 gtcggagtcgaacttgaacccggtcttgacgtcaaattttgcttggtatccatattttgt 673
Query: 781 cgc 783
|||
Sbjct: 672 cgc 670
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3463
Number of Sequences: 1807
Number of extensions: 3463
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 783
length of database: 10,358,551
effective HSP length: 16
effective length of query: 767
effective length of database: 10,329,639
effective search space: 7922833113
effective search space used: 7922833113
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.1 bits)
S1: 12 (24.5 bits)
S2: 50 (100.7 bits)